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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
37
ATAC-seq
6
DNase-seq
4
total RNA-seq
2
Hi-C
2
single cell RNA-seq
1
FAIRE-seq
Assay category
45
DNA binding
44
DNA accessibility
6
Transcription
2
3D chromatin structure
Target of assay
35
histone
35
histone modification
23
broad histone mark
12
narrow histone mark
9
control
1
RNA binding protein
1
transcription factor
Date released
47
October, 2019
35
February, 2023
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
Available data
75
bed narrowPeak
56
bam
44
bigWig
38
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
6
tsv
2
hic
1
bedpe bed3+
1
tar
Organism
97
Homo sapiens
Biosample type
73
tissue
cell line
24
primary cell
Organ
850
pancreas
684
connective tissue
491
adipose tissue
445
epithelium
390
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
97
AMP
Genome assembly (visualization)
76
GRCh38
46
hg19
Lab
97
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
MeRIP-seq
biosample_type!
cell line
BIOSAMPLE
ASSAY
97 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
coronary artery
5
36
2
1
tibial artery
23
1
2
1
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
17
2
2
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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