Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
ChIP-seq
61
total RNA-seq
21
ATAC-seq
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
163
DNA binding
63
Transcription
23
DNA accessibility
2
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
116
transcription factor
31
RNA binding protein
23
histone
23
histone modification
23
recombinant protein
22
control
15
chromatin remodeller
12
narrow histone mark
11
broad histone mark
Date released
November, 2017
61
November, 2018
43
August, 2021
30
February, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
15
November, 2019
11
March, 2020
6
February, 2023
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
202
bam
198
bigWig
143
bed narrowPeak
112
fastq
106
bigBed narrowPeak
67
tsv
3
bed bed3+
bedpe bed3+
2
hic
2
tagAlign
1
bed bed3
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
1
txt
1
vcf
Organism
269
Homo sapiens
Biosample type
2371
tissue
1062
primary cell
386
in vitro differentiated cells
273
cell line
10
stem cell
Organ
85
liver
85
pancreas
72
epithelium
66
artery
66
blood vessel
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
262
AMP
9
T1D
2
community
Genome assembly (visualization)
198
hg19
183
GRCh38
Lab
233
AMP-T2D consortium
33
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
85
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
1
inconsistent assembly
assay_title!
MeRIP-seq
files.file_type!
bedpe bed3+
month_released!
November, 2017
organ_slims!
heart
BIOSAMPLE
ASSAY
273 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
63
14
1
2
2
1
1
1
EndoC_BH1
15
33
19
3
2
2
1
GM12878
60
1
Panc1
13
1
1
H1-hESC
8
+ See 13 more…
See all biosamples
Download