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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
ChIP-seq
61
total RNA-seq
21
ATAC-seq
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
WGBS
1
whole genome sequencing assay
Assay category
464
DNA binding
61
Transcription
23
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
356
transcription factor
89
recombinant protein
76
control
65
RNA binding protein
30
chromatin remodeller
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
2
other context
2
other post-translational modification
Date released
303
November, 2017
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
28
February, 2021
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
5
February, 2023
1
January, 2018
1
May, 2020
Available data
516
bam
466
bigWig
427
fastq
392
bed narrowPeak
355
bigBed narrowPeak
67
tsv
59
bed broadPeak
59
bigBed broadPeak
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
572
Homo sapiens
Biosample type
2220
tissue
975
primary cell
572
cell line
353
in vitro differentiated cells
8
stem cell
Organ
389
liver
85
pancreas
72
epithelium
61
blood
61
bodily fluid
60
artery
60
blood vessel
heart
60
vasculature
19
kidney
8
embryo
1
mammary gland
Project
563
AMP
9
T1D
Genome assembly (visualization)
453
hg19
390
GRCh38
Lab
533
AMP-T2D consortium
34
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
Audit category:
86
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_title!
MeRIP-seq
files.file_type!
tagAlign
organ_slims!
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BIOSAMPLE
ASSAY
572 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
HiChIP
WGBS
whole genome sequencing assay
cell line
HepG2
366
14
1
2
2
2
1
1
EndoC_BH1
15
33
19
1
3
2
2
GM12878
60
1
Panc1
13
1
1
H1-hESC
8
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