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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
401
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
401
DNA binding
104
Transcription
12
DNA accessibility
1
DNA methylation
Target of assay
349
transcription factor
89
recombinant protein
76
control
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
280
November, 2017
95
February, 2021
40
November, 2018
29
October, 2019
25
December, 2018
17
January, 2019
14
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
518
bam
459
bigWig
364
fastq
341
bed narrowPeak
294
bigBed narrowPeak
119
tsv
55
bed broadPeak
55
bigBed broadPeak
20
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
518
Homo sapiens
Biosample type
1884
tissue
599
primary cell
518
cell line
285
in vitro differentiated cells
3
stem cell
Organ
313
liver
66
artery
66
blood vessel
66
heart
66
vasculature
62
pancreas
50
blood
50
bodily fluid
50
epithelium
15
kidney
8
embryo
Project
514
AMP
4
T1D
Genome assembly (visualization)
448
hg19
405
GRCh38
Lab
518
AMP-T2D consortium
Audit category:
61
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
20
inconsistent control read length
5
inconsistent control run_type
assay_title!
MeRIP-seq
lab.title!
Xin Sun, UCSD
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
518 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
306
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
50
EndoC_BH1
14
33
1
Panc1
13
1
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