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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
17
total RNA-seq
5
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
18
DNA binding
17
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
315
November, 2017
61
November, 2018
42
August, 2021
28
December, 2018
28
October, 2019
23
January, 2019
6
March, 2020
5
February, 2023
4
February, 2021
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
22
bigWig
17
tsv
14
bed narrowPeak
8
bam
1
bedpe bed3+
1
hic
1
vcf
Organism
42
Homo sapiens
Biosample type
137
tissue
42
cell line
42
in vitro differentiated cells
Organ
31
liver
8
embryo
epithelium
2
kidney
2
pancreas
Project
42
AMP
Genome assembly (visualization)
23
hg19
8
GRCh38
Lab
34
Bing Ren, UCSD
8
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
MeRIP-seq
organ_slims!
epithelium
heart
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
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