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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
705
ChIP-seq
229
ATAC-seq
178
DNase-seq
4
FAIRE-seq
Assay category
705
DNA binding
411
DNA accessibility
Target of assay
598
histone modification
597
histone
306
narrow histone mark
290
broad histone mark
107
transcription factor
32
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
163
June, 2019
153
October, 2019
109
August, 2017
93
May, 2019
89
August, 2021
70
December, 2017
65
April, 2019
65
February, 2023
58
November, 2017
45
October, 2018
40
May, 2024
38
May, 2022
27
May, 2020
25
November, 2019
17
November, 2018
16
February, 2018
12
October, 2017
8
February, 2021
7
July, 2019
6
January, 2019
5
May, 2021
3
December, 2018
2
March, 2020
Available data
2198
bam
2031
bigWig
1207
tsv
1116
bed narrowPeak
578
bigBed narrowPeak
518
fastq
278
tagAlign
230
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
160
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
1110
Homo sapiens
Biosample type
984
tissue
404
cell line
295
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
192
brain
173
heart
153
kidney
127
liver
125
pancreas
100
blood vessel
100
vasculature
92
limb
62
artery
58
connective tissue
51
musculature of body
30
epithelium
30
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
8
bone element
8
skeleton
1
pituitary gland
Project
1114
AMP
2
T1D
Genome assembly (visualization)
1011
GRCh38
908
hg19
Lab
970
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
27
inconsistent control
17
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
assay_title!
MeRIP-seq
BIOSAMPLE
ASSAY
1116 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
82
20
2
kidney
20
64
13
1
islet of Langerhans
20
37
1
1
coronary artery
3
36
2
left cardiac atrium
40
1
+ See 131 more…
in vitro differentiated cells
adipocyte
42
1
1
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
12
definitive endodermal cell
6
+ See 13 more…
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