Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ATAC-seq
74
ChIP-seq
13
total RNA-seq
2
snATAC-seq
1
single cell RNA-seq
Assay category
81
DNA accessibility
74
DNA binding
14
Transcription
Target of assay
30
histone
30
histone modification
29
control
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
3
December, 2019
2
January, 2018
1
August, 2022
Available data
108
bed narrowPeak
74
bam
58
fastq
45
bigBed narrowPeak
45
bigWig
5
bed bed3
4
tsv
4
txt
Organism
169
Homo sapiens
Biosample type
169
tissue
primary cell
16
in vitro differentiated cells
6
cell line
Organ
69
pancreas
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
24
adipose tissue
24
connective tissue
14
epithelium
8
bone element
8
skeleton
1
brain
Project
151
AMP
18
T1D
Genome assembly (visualization)
80
GRCh38
78
hg19
Lab
151
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control read length
assay_title!
MeRIP-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
169 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
tissue
coronary artery
35
body of pancreas
33
islet of Langerhans
11
5
2
retina
15
2
endocrine pancreas
16
+ See 11 more…
See all biosamples
Download