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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
963
total RNA-seq
905
ChIP-seq
175
DNase-seq
169
single cell RNA-seq
157
ATAC-seq
87
RNA microarray
27
WGBS
22
snATAC-seq
21
pCHi-C
16
small RNA-seq
11
RRBS
5
Hi-C
4
FAIRE-seq
MeRIP-seq
3
snDrop-seq
Assay category
1148
Transcription
905
DNA binding
358
DNA accessibility
38
DNA methylation
5
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
185
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
284
August, 2017
220
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
115
May, 2019
100
August, 2021
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
64
February, 2023
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
33
March, 2020
26
November, 2018
24
February, 2020
23
October, 2017
19
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
3
December, 2019
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1904
bam
1769
bigWig
1071
tsv
890
bed narrowPeak
558
bigBed narrowPeak
377
fastq
238
tagAlign
210
bed broadPeak
202
bed bed3+
173
bigBed broadPeak
100
txt
25
bed bedMethyl
25
bigBed bedMethyl
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2556
Homo sapiens
Biosample type
2565
tissue
1079
primary cell
654
cell line
387
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
498
pancreas
488
adipose tissue
360
liver
310
heart
265
brain
158
bone element
157
kidney
132
blood vessel
132
vasculature
122
limb
80
musculature of body
73
artery
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2468
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1781
GRCh38
1715
hg19
Lab
2360
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
MeRIP-seq
files.file_type!
bedpe bed3+
lab.title!
Katalin Susztak, Upenn
organ_slims!
eye
BIOSAMPLE
ASSAY
2565 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
ATAC-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
small RNA-seq
RRBS
Hi-C
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
278
69
1
6
67
7
1
1
1
adipose tissue
382
2
3
3
1
liver
167
145
2
1
20
3
1
1
1
kidney
27
13
53
1
1
bone element
84
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