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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
total RNA-seq
20
pCHi-C
16
small RNA-seq
12
WGBS
11
Hi-C
8
ATAC-seq
6
RRBS
2
ChIP-seq
2
FAIRE-seq
Assay category
56
Transcription
18
DNA methylation
11
3D chromatin structure
10
DNA accessibility
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
539
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
3
December, 2019
2
January, 2018
1
August, 2022
Available data
75
tsv
74
bigWig
73
bam
14
bed bedMethyl
14
bigBed bedMethyl
9
bed narrowPeak
7
bedpe bed3+
7
hic
2
bigBed narrowPeak
Organism
117
Homo sapiens
Biosample type
117
tissue
32
primary cell
11
cell line
8
in vitro differentiated cells
4
stem cell
Organ
27
heart
15
pancreas
13
brain
12
musculature of body
11
adipose tissue
11
connective tissue
11
liver
10
blood vessel
10
vasculature
5
limb
4
kidney
2
intestine
1
adrenal gland
1
artery
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
pericardium
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
113
AMP
4
T1D
Genome assembly (visualization)
78
hg19
70
GRCh38
Lab
117
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
MeRIP-seq
files.file_type!
csv
BIOSAMPLE
ASSAY
117 results
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Clear Filters
total RNA-seq
pCHi-C
small RNA-seq
WGBS
Hi-C
ATAC-seq
RRBS
ChIP-seq
FAIRE-seq
tissue
heart left ventricle
3
1
4
1
2
1
islet of Langerhans
2
2
1
2
liver
3
1
1
1
aorta
1
1
2
1
heart right ventricle
1
1
2
1
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