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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
834
ChIP-seq
173
DNase-seq
146
ATAC-seq
85
RNA microarray
60
single cell RNA-seq
57
total RNA-seq
25
WGBS
22
snATAC-seq
14
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
MeRIP-seq
Assay category
834
DNA binding
345
DNA accessibility
117
Transcription
36
DNA methylation
14
3D chromatin structure
Target of assay
574
histone modification
573
histone
306
narrow histone mark
267
broad histone mark
169
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
208
October, 2019
195
August, 2017
160
June, 2019
93
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
65
May, 2019
56
February, 2023
50
May, 2020
48
December, 2017
47
September, 2023
40
May, 2024
26
July, 2019
26
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
11
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
2
August, 2021
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
1
May, 2023
Available data
1820
bam
1702
bigWig
tsv
820
bed narrowPeak
499
bigBed narrowPeak
377
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
100
txt
24
bed bedMethyl
24
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1427
Homo sapiens
Biosample type
1436
tissue
783
primary cell
523
cell line
263
in vitro differentiated cells
6
stem cell
Organ
242
brain
226
pancreas
207
liver
202
heart
145
kidney
119
blood vessel
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1339
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
770
hg19
766
GRCh38
Lab
1231
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
MeRIP-seq
files.file_type!
tsv
lab.title!
Katalin Susztak, Upenn
organ_slims!
vasculature
BIOSAMPLE
ASSAY
1436 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
RNA microarray
single cell RNA-seq
total RNA-seq
WGBS
snATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
liver
145
2
20
1
20
3
1
1
islet of Langerhans
71
1
67
31
7
3
1
4
1
kidney
27
13
48
1
1
bone element
84
heart left ventricle
35
3
2
4
1
1
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