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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
35
ATAC-seq
27
DNase-seq
9
total RNA-seq
3
Hi-C
3
pCHi-C
Assay category
123
DNA binding
102
Transcription
62
DNA accessibility
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
21
May, 2019
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
169
bed narrowPeak
140
bigWig
115
bam
104
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
3
bedpe bed3+
3
hic
Organism
293
Homo sapiens
Biosample type
293
tissue
66
cell line
8
primary cell
1
in vitro differentiated cells
Organ
537
connective tissue
495
pancreas
478
adipose tissue
353
liver
295
kidney
293
heart
254
brain
158
bone element
126
blood vessel
126
vasculature
117
limb
75
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
293
AMP
Genome assembly (visualization)
174
GRCh38
101
hg19
Lab
253
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
assay_title!
MeRIP-seq
month_released!
July, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
293 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
total RNA-seq
Hi-C
pCHi-C
tissue
heart left ventricle
35
18
3
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
35
2
1
heart
14
1
18
2
1
heart right ventricle
13
17
1
1
1
1
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