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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
997
total RNA-seq
782
ChIP-seq
193
ATAC-seq
148
DNase-seq
87
RNA microarray
87
single cell RNA-seq
28
snATAC-seq
19
WGBS
18
pCHi-C
15
small RNA-seq
13
Hi-C
10
RRBS
4
FAIRE-seq
MeRIP-seq
3
snDrop-seq
Assay category
1099
Transcription
782
DNA binding
373
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
531
histone modification
530
histone
284
narrow histone mark
246
broad histone mark
169
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
284
August, 2017
213
October, 2019
193
May, 2020
137
August, 2021
133
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
66
May, 2022
57
July, 2019
48
December, 2017
47
September, 2023
40
November, 2019
38
May, 2021
33
March, 2020
28
February, 2023
26
November, 2018
23
April, 2019
23
October, 2017
21
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1772
bam
1612
bigWig
960
tsv
781
bed narrowPeak
470
bigBed narrowPeak
377
fastq
238
tagAlign
183
bed broadPeak
175
bed bed3+
157
txt
146
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2395
Homo sapiens
Biosample type
2404
tissue
1070
primary cell
590
cell line
393
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
501
pancreas
488
adipose tissue
361
liver
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2307
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1665
GRCh38
1612
hg19
Lab
2096
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
MeRIP-seq
organ_slims!
eye
heart
BIOSAMPLE
ASSAY
2404 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
278
69
67
1
6
7
3
1
1
adipose tissue
382
2
3
3
1
liver
167
145
20
2
1
3
1
1
1
1
kidney
49
27
75
13
64
6
1
1
1
bone element
84
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