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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1010
total RNA-seq
714
ChIP-seq
219
ATAC-seq
148
DNase-seq
87
RNA microarray
81
single cell RNA-seq
28
snATAC-seq
21
pCHi-C
17
WGBS
15
small RNA-seq
12
Hi-C
10
RRBS
4
FAIRE-seq
MeRIP-seq
3
snDrop-seq
Assay category
1106
Transcription
714
DNA binding
399
DNA accessibility
27
DNA methylation
12
3D chromatin structure
Target of assay
481
histone modification
480
histone
270
narrow histone mark
210
broad histone mark
155
control
80
transcription factor
16
RNA binding protein
3
other context
3
other post-translational modification
chromatin remodeller
Date released
545
February, 2021
284
August, 2017
208
October, 2019
193
May, 2020
135
June, 2019
131
August, 2021
120
July, 2018
82
November, 2017
74
October, 2018
66
May, 2022
59
February, 2023
51
July, 2019
49
May, 2019
47
September, 2023
46
December, 2017
40
November, 2019
38
May, 2021
30
March, 2020
26
November, 2018
23
April, 2019
23
October, 2017
20
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1694
bam
1549
bigWig
952
tsv
750
bed narrowPeak
414
bigBed narrowPeak
375
fastq
238
tagAlign
183
bed broadPeak
175
bed bed3+
157
txt
146
bigBed broadPeak
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
7
hic
6
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2360
Homo sapiens
Biosample type
2369
tissue
1039
primary cell
560
cell line
390
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
501
pancreas
488
adipose tissue
359
liver
heart
299
kidney
265
brain
158
bone element
133
blood vessel
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2272
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1602
GRCh38
1576
hg19
Lab
2061
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
25
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
MeRIP-seq
organ_slims!
heart
vasculature
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
2369 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
292
71
68
1
6
7
4
3
1
1
adipose tissue
382
2
3
1
3
liver
167
143
20
2
1
1
3
1
1
1
kidney
49
27
75
13
64
6
1
1
1
bone element
84
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