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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
466
ChIP-seq
184
total RNA-seq
23
ATAC-seq
6
DNase-seq
4
Hi-C
4
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
466
DNA binding
188
Transcription
29
DNA accessibility
4
3D chromatin structure
4
DNA methylation
1
DNA sequencing
Target of assay
338
transcription factor
82
recombinant protein
80
control
58
RNA binding protein
45
histone modification
44
histone
24
broad histone mark
23
chromatin remodeller
20
narrow histone mark
2
other context
2
other post-translational modification
Date released
303
November, 2017
144
May, 2020
63
December, 2017
52
November, 2018
40
May, 2022
33
August, 2017
31
August, 2021
9
July, 2019
7
October, 2019
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
676
bam
617
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
169
tsv
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
697
Homo sapiens
Biosample type
388
cell line
290
tissue
15
in vitro differentiated cells
4
primary cell
Organ
911
pancreas
697
liver
659
connective tissue
499
epithelium
481
adipose tissue
379
heart
347
kidney
228
vasculature
223
blood vessel
166
brain
159
bone element
135
artery
121
limb
77
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
697
AMP
Genome assembly (visualization)
576
hg19
494
GRCh38
Lab
626
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
16
inconsistent control read length
8
inconsistent control run_type
assay_title!
MeRIP-seq
files.file_type!
bed bedMethyl
tagAlign
month_released!
December, 2019
BIOSAMPLE
ASSAY
697 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
366
14
1
2
2
2
1
tissue
liver
75
167
20
2
1
3
1
1
1
right lobe of liver
10
3
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
hepatocyte
1
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