Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
15
total RNA-seq
10
ATAC-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
94
DNA binding
20
DNA accessibility
15
Transcription
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
histone
16
histone modification
16
recombinant protein
14
control
9
narrow histone mark
7
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
0
April, 2020
Available data
179
bed narrowPeak
136
bam
127
bigWig
123
tsv
88
fastq
73
bigBed narrowPeak
64
xls
57
txt
24
tagAlign
14
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
1
vcf
Organism
136
Homo sapiens
Biosample type
69
cell line
37
in vitro differentiated cells
26
tissue
4
primary cell
Organ
57
liver
15
blood
15
bodily fluid
9
spleen
8
embryo
7
pancreas
4
epithelium
2
brain
1
adipose tissue
1
connective tissue
Project
136
AMP
Genome assembly (visualization)
120
GRCh38
111
hg19
Lab
136
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
MeRIP-seq
BIOSAMPLE
ASSAY
136 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
cell line
HepG2
45
1
GM12878
15
H1-hESC
8
in vitro differentiated cells
neural progenitor cell
20
7
10
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
primary cell
hepatocyte
4
See all biosamples
Download