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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
5
DNase-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
20
DNA binding
9
Transcription
7
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
16
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
May, 2019
21
October, 2019
8
July, 2019
4
August, 2021
4
March, 2020
3
June, 2019
3
November, 2017
1
February, 2020
Available data
33
bam
29
bigWig
19
bed narrowPeak
18
bigBed narrowPeak
10
tsv
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
44
Homo sapiens
Biosample type
29
primary cell
15
tissue
Organ
934
pancreas
786
liver
684
connective tissue
507
epithelium
491
adipose tissue
372
heart
346
kidney
258
brain
186
vasculature
180
blood vessel
159
bone element
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
30
hg19
23
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
MeRIP-seq
month_released!
December, 2019
May, 2019
organ_slims!
artery
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
tissue
aorta
1
1
4
2
1
ascending aorta
1
2
thoracic aorta
2
1
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