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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
ChIP-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
4
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
57
August, 2021
7
February, 2023
7
May, 2022
5
February, 2021
1
October, 2019
1
October, 2022
Available data
3115
bam
2866
bigWig
1684
bed narrowPeak
1425
tsv
1358
fastq
1042
bigBed narrowPeak
322
bed broadPeak
308
tagAlign
285
bigBed broadPeak
271
bed bed3+
153
zippedFastqFolder
77
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
77
Homo sapiens
Biosample type
74
tissue
3
in vitro differentiated cells
1
cell line
Organ
62
kidney
6
pancreas
4
bone element
4
skeleton
1
brain
1
musculature of body
Project
78
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
57
Katalin Susztak, Upenn
12
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
6
audit script error
1
inconsistent ontology term
assay_title!
RNA microarray
assay_title!!
RNA microarray
month_released!
May, 2021
BIOSAMPLE
ASSAY
78 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
MPRA
snATAC-seq
tissue
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 3 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
See all biosamples
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