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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
RRBS
4
total RNA-seq
2
Hi-C
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
12
DNA binding
5
Transcription
2
3D chromatin structure
2
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
9
August, 2017
July, 2019
5
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
63
bigWig
bed narrowPeak
52
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
5
tsv
2
bedpe bed3+
2
hic
1
txt
Organism
22
Homo sapiens
Biosample type
20
tissue
2
primary cell
Organ
726
pancreas
590
connective tissue
465
adipose tissue
359
epithelium
339
liver
181
heart
159
kidney
93
vasculature
92
blood vessel
67
bone element
66
brain
65
artery
27
eye
25
limb
23
embryo
22
musculature of body
20
lung
16
nerve
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
22
AMP
Genome assembly (visualization)
6
hg19
2
GRCh38
Lab
22
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
RNA microarray
RRBS
files.file_type!
bed narrowPeak
month_released!
July, 2019
organ_slims!
blood
BIOSAMPLE
ASSAY
22 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
1
1
1
psoas muscle
2
2
1
gastrocnemius medialis
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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