Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
37
DNase-seq
12
total RNA-seq
10
ATAC-seq
9
snATAC-seq
6
Hi-C
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
158
DNA binding
56
DNA accessibility
15
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
77
histone
77
histone modification
51
transcription factor
50
broad histone mark
28
control
27
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
69
October, 2019
43
June, 2019
27
December, 2018
22
August, 2017
18
January, 2019
15
November, 2018
9
July, 2019
8
January, 2021
7
May, 2019
6
February, 2021
5
March, 2020
4
February, 2020
2
January, 2018
2
May, 2022
Available data
191
bam
175
bigWig
168
bed narrowPeak
147
bigBed narrowPeak
60
fastq
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
15
tsv
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
Organism
237
Homo sapiens
Biosample type
155
tissue
61
cell line
21
primary cell
Organ
944
pancreas
789
liver
682
connective tissue
517
epithelium
490
adipose tissue
391
heart
348
kidney
284
brain
235
vasculature
230
blood vessel
141
artery
122
limb
91
musculature of body
75
bone element
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
229
AMP
8
T1D
Genome assembly (visualization)
183
hg19
165
GRCh38
Lab
229
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
1
inconsistent control
assay_title!
RNA microarray
RRBS
BIOSAMPLE
ASSAY
237 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
snATAC-seq
Hi-C
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
tibial nerve
35
2
5
1
skeletal muscle tissue
22
1
1
1
1
1
tibial artery
23
2
1
1
muscle of leg
7
13
1
muscle of arm
17
+ See 12 more…
cell line
GM12878
60
1
primary cell
skeletal muscle satellite cell
8
1
1
peripheral blood mononuclear cell
8
skeletal muscle cell
2
1
See all biosamples
Download