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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
18
DNase-seq
8
snATAC-seq
1
ATAC-seq
Assay category
54
DNA binding
27
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
18
June, 2019
15
January, 2019
12
November, 2018
8
January, 2021
1
January, 2018
Available data
73
bigWig
72
bam
72
bed narrowPeak
72
bigBed narrowPeak
54
fastq
18
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
Organism
81
Homo sapiens
Biosample type
55
cell line
18
tissue
8
primary cell
Organ
891
pancreas
681
liver
647
connective tissue
487
epithelium
466
adipose tissue
371
heart
336
kidney
253
brain
213
vasculature
209
blood vessel
132
artery
105
limb
85
musculature of body
75
bone element
63
blood
63
bodily fluid
59
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
73
AMP
8
T1D
Genome assembly (visualization)
73
hg19
72
GRCh38
Lab
73
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
RNA microarray
RRBS
target.investigated_as!
control
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
DNase-seq
snATAC-seq
ATAC-seq
cell line
GM12878
54
1
tissue
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
primary cell
peripheral blood mononuclear cell
8
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