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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
23
ChIP-seq
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
RNA microarray
Assay category
399
Transcription
23
DNA binding
7
DNA accessibility
Target of assay
18
control
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
August, 2017
23
October, 2018
12
July, 2019
February, 2020
1
August, 2018
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
425
bam
408
bigWig
399
tsv
26
fastq
10
bed narrowPeak
8
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
431
Homo sapiens
Biosample type
428
tissue
2
primary cell
1
in vitro differentiated cells
Organ
734
liver
706
pancreas
556
connective tissue
447
epithelium
431
adipose tissue
382
heart
352
kidney
274
brain
231
vasculature
225
blood vessel
139
artery
118
limb
75
bone element
69
blood
69
bodily fluid
67
musculature of body
60
eye
42
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
431
AMP
Genome assembly (visualization)
411
hg19
408
GRCh38
Lab
431
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
RNA microarray
WGBS
month_released!
August, 2017
February, 2020
BIOSAMPLE
ASSAY
431 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
tissue
adipose tissue
382
3
1
omental fat pad
4
11
1
1
2
subcutaneous adipose tissue
6
12
1
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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