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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1009
total RNA-seq
712
ChIP-seq
244
ATAC-seq
174
DNase-seq
171
single cell RNA-seq
RNA microarray
27
WGBS
21
pCHi-C
18
snATAC-seq
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1180
Transcription
712
DNA binding
440
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
460
histone modification
459
histone
264
broad histone mark
195
narrow histone mark
160
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
284
August, 2017
October, 2019
228
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
61
July, 2019
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
December, 2019
Available data
1705
bam
1596
bigWig
1050
tsv
833
bed narrowPeak
514
bigBed narrowPeak
377
fastq
209
bed broadPeak
201
bed bed3+
189
tagAlign
172
bigBed broadPeak
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2406
Homo sapiens
Biosample type
2413
tissue
1052
primary cell
632
cell line
386
in vitro differentiated cells
10
stem cell
Organ
542
connective tissue
500
pancreas
484
adipose tissue
352
liver
304
heart
292
kidney
175
brain
107
blood vessel
107
vasculature
81
musculature of body
74
bone element
53
limb
47
artery
35
eye
25
spleen
18
ureter
16
skeleton
14
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2335
AMP
47
KPMP
31
T1D
LungMap
Genome assembly (visualization)
1682
GRCh38
1576
hg19
Lab
2080
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
audit script error
5
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
RNA microarray
small RNA-seq
award.project!
LungMap
month_released!
October, 2019
BIOSAMPLE
ASSAY
2413 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
278
50
55
1
6
7
3
1
1
4
adipose tissue
382
2
2
3
1
liver
166
140
20
2
1
3
1
1
1
kidney
49
23
75
13
64
6
1
1
1
heart left ventricle
3
35
2
3
18
4
1
1
1
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