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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
7
ATAC-seq
6
total RNA-seq
4
Hi-C
2
DNase-seq
1
WGBS
Assay category
43
DNA binding
9
DNA accessibility
6
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
12
control
11
narrow histone mark
Date released
43
October, 2019
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
Available data
56
bam
39
bed narrowPeak
38
bigWig
32
bigBed narrowPeak
6
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
63
Homo sapiens
Biosample type
63
tissue
Organ
942
pancreas
789
liver
665
connective tissue
503
epithelium
489
adipose tissue
358
heart
268
kidney
256
brain
229
vasculature
225
blood vessel
artery
90
limb
75
bone element
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
63
AMP
Genome assembly (visualization)
43
GRCh38
43
hg19
Lab
63
AMP-T2D consortium
assay_title!
RNA microarray
snDrop-seq
month_released!
June, 2019
organ_slims!
artery
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
DNase-seq
WGBS
tissue
tibial nerve
35
1
5
2
muscle of leg
7
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
distal epiphysis of humerus
1
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