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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
RNA microarray
total RNA-seq
17
ChIP-seq
12
ATAC-seq
2
DNase-seq
1
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
17
DNA binding
15
DNA accessibility
1
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
21
October, 2019
8
February, 2021
4
February, 2023
1
May, 2021
Available data
28
bam
21
bed narrowPeak
15
bigWig
13
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
bedpe bed3+
1
tar
Organism
34
Homo sapiens
Biosample type
22
primary cell
12
tissue
Organ
600
liver
542
pancreas
387
epithelium
318
heart
292
kidney
269
brain
208
connective tissue
173
vasculature
167
blood vessel
115
limb
91
adipose tissue
88
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
21
vein
20
lung
18
ureter
13
bone element
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
33
AMP
1
T1D
Genome assembly (visualization)
28
hg19
20
GRCh38
Lab
33
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
assay_title!
RNA microarray
total RNA-seq
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
Hi-C
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
megakaryocyte
1
tissue
acetabular part of hip bone
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
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