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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
4
WGBS
3
ATAC-seq
3
pCHi-C
2
total RNA-seq
RNA microarray
Assay category
32
DNA binding
4
DNA methylation
3
DNA accessibility
2
Transcription
Target of assay
32
control
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
Date released
18
October, 2018
10
August, 2017
4
December, 2018
3
November, 2018
2
February, 2020
2
March, 2020
1
August, 2018
1
February, 2023
1
January, 2018
1
January, 2019
1
October, 2019
Available data
29
fastq
27
bam
4
tsv
2
bigWig
1
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
tagAlign
Organism
44
Homo sapiens
Biosample type
43
tissue
1
in vitro differentiated cells
Organ
296
pancreas
227
liver
224
epithelium
147
kidney
126
heart
73
connective tissue
53
eye
50
brain
40
vasculature
38
blood vessel
35
adipose tissue
24
limb
23
musculature of body
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
bone element
9
spleen
8
skeleton
7
embryo
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
44
AMP
Genome assembly (visualization)
GRCh38
432
hg19
Lab
44
AMP-T2D consortium
assay_title!
RNA microarray
assembly!
GRCh38
target.investigated_as!
histone
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
WGBS
ATAC-seq
pCHi-C
total RNA-seq
tissue
subcutaneous adipose tissue
10
1
omental fat pad
8
1
spleen
8
1
subcutaneous abdominal adipose tissue
5
3
adipose tissue
1
1
3
1
in vitro differentiated cells
white fat cell
1
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