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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ATAC-seq
41
WGBS
34
single cell RNA-seq
34
total RNA-seq
21
ChIP-seq
21
snATAC-seq
4
pCHi-C
2
DNase-seq
Assay category
75
DNA accessibility
68
Transcription
41
DNA methylation
21
DNA binding
Target of assay
21
histone
21
histone modification
21
narrow histone mark
Date released
249
August, 2021
160
February, 2023
155
May, 2022
105
August, 2017
82
May, 2021
59
September, 2020
58
May, 2020
54
February, 2021
54
October, 2019
47
September, 2023
40
May, 2024
32
March, 2020
25
February, 2020
19
April, 2020
16
January, 2021
14
May, 2023
13
November, 2017
10
November, 2020
7
August, 2020
7
July, 2019
7
October, 2017
5
January, 2018
5
March, 2023
4
July, 2018
3
December, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
March, 2019
1
November, 2018
1
October, 2022
1
September, 2018
Available data
134
zippedFastqFolder
bam
9
tagAlign
6
fastq
6
txt
Organism
209
Homo sapiens
Biosample type
136
primary cell
73
tissue
Organ
83
pancreas
82
epithelium
21
eye
20
liver
4
gonad
4
ovary
2
kidney
1
brain
1
connective tissue
1
limb
1
lymph node
1
musculature of body
1
pituitary gland
1
skin of body
Project
134
HPAP
75
AMP
Genome assembly (visualization)
hg19
3
GRCh38
Lab
134
Klaus Kaestner, Upenn
55
AMP-T2D consortium
20
Karen Mohlke, UNC
assay_title!
RNA microarray
assembly!
hg19
files.file_type!
bam
BIOSAMPLE
ASSAY
209 results
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ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
DNase-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
kidney glomerular epithelial cell
1
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tissue
islet of Langerhans
13
14
21
4
liver
20
skeletal muscle tissue
1
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