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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
382
ChIP-seq
100
total RNA-seq
13
ATAC-seq
3
Hi-C
1
DNase-seq
1
pCHi-C
Assay category
382
DNA binding
100
Transcription
14
DNA accessibility
3
3D chromatin structure
Target of assay
345
transcription factor
78
recombinant protein
62
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
258
November, 2017
93
February, 2021
54
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
8
November, 2019
7
March, 2020
5
May, 2021
5
October, 2019
1
January, 2018
Available data
487
bigWig
480
bam
375
bed narrowPeak
359
fastq
340
bigBed narrowPeak
101
tsv
51
bed broadPeak
51
bigBed broadPeak
11
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
500
Homo sapiens
Biosample type
1475
tissue
500
cell line
490
primary cell
261
in vitro differentiated cells
2
stem cell
Organ
321
liver
64
artery
64
blood vessel
64
heart
64
vasculature
55
blood
55
bodily fluid
49
pancreas
46
epithelium
kidney
8
embryo
Project
496
AMP
4
T1D
Genome assembly (visualization)
500
hg19
436
GRCh38
Lab
486
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
44
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
20
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_title!
RNA microarray
organ_slims!
kidney
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
500 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
pCHi-C
cell line
HepG2
313
5
1
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
1
EndoC_BH1
7
33
3
1
H1-hESC
8
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