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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
526
ChIP-seq
161
DNase-seq
122
ATAC-seq
16
small RNA-seq
11
Hi-C
9
RRBS
6
single cell RNA-seq
4
FAIRE-seq
1
snATAC-seq
Assay category
918
Transcription
526
DNA binding
288
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Target of assay
434
histone modification
433
histone
236
narrow histone mark
197
broad histone mark
88
transcription factor
22
RNA binding protein
4
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
180
August, 2017
170
May, 2020
163
October, 2019
147
June, 2019
116
July, 2018
93
May, 2019
65
April, 2019
60
July, 2019
45
October, 2018
40
November, 2019
39
December, 2017
39
May, 2022
38
May, 2021
33
February, 2023
18
March, 2020
17
November, 2018
13
October, 2017
6
April, 2018
6
January, 2019
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1646
bam
1643
bigWig
918
tsv
773
bed narrowPeak
488
bigBed narrowPeak
297
fastq
192
bed bed3+
190
bed broadPeak
160
bigBed broadPeak
99
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1746
Homo sapiens
Biosample type
1749
tissue
619
primary cell
297
in vitro differentiated cells
264
cell line
3
stem cell
Organ
482
connective tissue
424
adipose tissue
413
pancreas
268
liver
137
brain
113
heart
96
limb
92
kidney
70
blood vessel
70
bone element
70
vasculature
61
musculature of body
31
nerve
30
eye
27
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1750
AMP
2
T1D
Genome assembly (visualization)
1805
GRCh38
1752
hg19
1
hg18
Lab
1709
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
assay_title!
RNA microarray
month_released!
November, 2017
BIOSAMPLE
ASSAY
1752 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
260
31
1
42
2
1
6
1
liver
147
83
2
20
1
1
1
bone tissue
58
heart left ventricle
3
29
3
2
1
1
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stem cell
hESC
3
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