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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
790
ChIP-seq
748
total RNA-seq
198
ATAC-seq
171
DNase-seq
169
single cell RNA-seq
RNA microarray
24
pCHi-C
23
WGBS
16
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
931
Transcription
790
DNA binding
387
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
555
histone modification
554
histone
292
narrow histone mark
262
broad histone mark
158
control
77
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
456
February, 2021
239
October, 2019
226
August, 2021
193
May, 2020
159
June, 2019
137
August, 2017
113
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
71
July, 2019
48
December, 2017
47
September, 2023
41
May, 2022
40
May, 2024
31
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
3
May, 2021
2
January, 2018
1
December, 2019
1
November, 2019
Available data
1478
bam
1399
bigWig
861
bed narrowPeak
794
tsv
499
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
177
bed bed3+
170
bigBed broadPeak
164
fastq
64
xls
61
txt
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
5
bed bed3
1
csv
1
tagAlign bed3+
Organism
2178
Homo sapiens
Biosample type
2179
tissue
714
primary cell
570
cell line
389
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
pancreas
487
adipose tissue
361
liver
313
heart
292
kidney
265
brain
133
blood vessel
133
vasculature
122
limb
81
musculature of body
74
bone element
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2112
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1473
GRCh38
1341
hg19
Lab
1890
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
7
inconsistent ontology term
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
assay_title!
RNA microarray
audit.ERROR.category!
audit script error
organ_slims!
pancreas
BIOSAMPLE
ASSAY
2179 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
2
382
3
1
3
liver
145
167
20
2
1
1
3
1
1
1
kidney
27
49
75
13
59
6
1
1
1
heart left ventricle
35
3
2
3
18
1
4
1
1
left cardiac atrium
40
1
18
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