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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1030
total RNA-seq
878
ChIP-seq
259
ATAC-seq
180
single cell RNA-seq
177
DNase-seq
28
snATAC-seq
27
WGBS
23
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
RNA microarray
3
snDrop-seq
Assay category
1226
Transcription
878
DNA binding
468
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
617
histone modification
616
histone
317
narrow histone mark
299
broad histone mark
187
control
76
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
262
August, 2017
239
October, 2019
228
August, 2021
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
38
March, 2020
26
November, 2018
24
February, 2020
19
April, 2020
19
October, 2017
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
December, 2019
Available data
1878
bam
1744
bigWig
1071
tsv
976
bed narrowPeak
557
bigBed narrowPeak
351
fastq
234
tagAlign
210
bed broadPeak
190
bed bed3+
175
bigBed broadPeak
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2648
Homo sapiens
Biosample type
2656
tissue
990
primary cell
557
cell line
273
in vitro differentiated cells
9
stem cell
Organ
533
connective tissue
495
pancreas
474
adipose tissue
361
liver
313
heart
297
kidney
258
brain
133
blood vessel
133
vasculature
121
limb
81
musculature of body
74
bone element
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
2559
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1830
GRCh38
1726
hg19
Lab
2304
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
audit script error
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
RNA microarray
audit.ERROR.category!
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
lymph node
BIOSAMPLE
ASSAY
2656 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
60
68
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
heart left ventricle
3
35
2
18
3
4
1
1
1
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