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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
36
ChIP-seq
3
ATAC-seq
3
WGBS
3
small RNA-seq
1
DNase-seq
RNA microarray
1
pCHi-C
Assay category
401
Transcription
36
DNA binding
4
DNA accessibility
3
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
386
February, 2021
39
August, 2017
12
July, 2019
2
February, 2020
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
October, 2019
Available data
441
bam
425
bigWig
401
tsv
fastq
12
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
445
Homo sapiens
Biosample type
443
tissue
2
primary cell
Organ
563
connective tissue
445
adipose tissue
399
pancreas
387
heart
329
kidney
325
liver
262
brain
vasculature
227
blood vessel
180
epithelium
141
artery
121
limb
85
musculature of body
75
bone element
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
9
blood
9
bodily fluid
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
Project
445
AMP
Genome assembly (visualization)
404
hg19
400
GRCh38
Lab
445
AMP-T2D consortium
Audit category:
inconsistent ontology term
assay_title!
RNA microarray
audit.ERROR.category!
inconsistent ontology term
files.file_type!
fastq
organ_slims!
vasculature
BIOSAMPLE
ASSAY
445 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
tissue
adipose tissue
382
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
omental fat pad
5
1
1
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
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