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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
Hi-C
Assay category
15
3D chromatin structure
Date released
9
March, 2020
4
October, 2019
2
August, 2021
Available data
2522
bam
2366
bigWig
1518
bed narrowPeak
1085
tsv
951
bigBed narrowPeak
787
fastq
301
bed broadPeak
295
tagAlign
278
bigBed broadPeak
244
bed bed3+
71
txt
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
15
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
15
Homo sapiens
Biosample type
8
tissue
4
in vitro differentiated cells
2
primary cell
1
cell line
Organ
pancreas
3
blood vessel
3
epithelium
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
1
kidney
Project
15
AMP
1
ITG
Genome assembly (visualization)
15
hg19
Lab
13
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
1
audit script error
assay_title!
RNA microarray
audit.ERROR.category!
inconsistent replicate
organ_slims!
pancreas
BIOSAMPLE
ASSAY
15 results
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Hi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
2
cell line
HepG2
1
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