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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
DNase-seq
106
ChIP-seq
2
ATAC-seq
Assay category
187
DNA accessibility
106
DNA binding
Target of assay
59
histone
59
histone modification
47
transcription factor
33
broad histone mark
26
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
170
June, 2019
66
November, 2017
41
August, 2017
9
November, 2018
3
October, 2019
2
October, 2017
1
March, 2019
1
November, 2020
Available data
2854
bam
2676
bigWig
1527
bed narrowPeak
1376
tsv
1033
fastq
889
bigBed narrowPeak
381
tagAlign
293
bed broadPeak
258
bigBed broadPeak
233
bed bed3+
77
txt
73
zippedFastqFolder
64
xls
29
bed bedMethyl
29
bigBed bedMethyl
17
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
287
Homo sapiens
Biosample type
206
tissue
59
cell line
27
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
46
musculature of body
45
brain
36
limb
30
heart
epithelium
21
pancreas
18
ureter
17
vasculature
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
293
AMP
Genome assembly (visualization)
275
hg19
255
GRCh38
Lab
291
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
assay_title!
RNA microarray
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
blood vessel
epithelium
BIOSAMPLE
ASSAY
293 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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