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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
49
total RNA-seq
40
ChIP-seq
11
single cell RNA-seq
6
snATAC-seq
1
Hi-C
Assay category
81
DNA accessibility
60
Transcription
40
DNA binding
1
3D chromatin structure
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
128
August, 2021
40
May, 2024
14
May, 2023
Available data
104
bed narrowPeak
64
xls
57
txt
40
bigWig
1
hic
Organism
182
Homo sapiens
Biosample type
182
tissue
Organ
142
kidney
40
heart
Project
182
AMP
Genome assembly (visualization)
115
GRCh38
1
hg19
Lab
3821
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
assay_title!
RNA microarray
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
182 results
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ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
Hi-C
tissue
kidney
75
49
11
6
1
left cardiac atrium
40
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