Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
41
ChIP-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
101
Transcription
41
DNA binding
29
DNA accessibility
Target of assay
85
histone
85
histone modification
broad histone mark
41
narrow histone mark
Date released
109
May, 2021
45
May, 2020
23
February, 2023
16
January, 2021
March, 2020
Available data
137
bam
137
bigWig
96
tsv
41
bed narrowPeak
40
tagAlign
Organism
193
Homo sapiens
Biosample type
160
primary cell
27
tissue
6
cell line
Organ
27
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
epithelium
1
thymus
Project
3549
AMP
324
HPAP
193
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
137
GRCh38
137
hg19
Lab
192
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_title!
RNA microarray
lab.title!
Katalin Susztak, Upenn
month_released!
March, 2020
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
193 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
40
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
5
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
1
3
2
See all biosamples
Download