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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
463
total RNA-seq
86
ChIP-seq
8
ATAC-seq
8
DNase-seq
6
WGBS
4
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
1
Hi-C
RNA microarray
1
RRBS
Assay category
470
Transcription
86
DNA binding
16
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
41
histone
41
histone modification
27
control
24
broad histone mark
18
transcription factor
17
narrow histone mark
6
RNA binding protein
Date released
447
February, 2021
57
August, 2017
23
October, 2018
18
July, 2019
18
June, 2019
6
November, 2020
2
April, 2018
February, 2020
2
July, 2018
2
March, 2020
2
October, 2019
1
February, 2023
1
January, 2018
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
534
bam
513
bigWig
471
tsv
46
fastq
30
bed narrowPeak
25
bigBed narrowPeak
14
bed bed3+
9
bed broadPeak
8
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
1
hdf5
Organism
584
Homo sapiens
Biosample type
544
tissue
in vitro differentiated cells
39
primary cell
1
stem cell
Organ
942
pancreas
775
liver
584
connective tissue
499
epithelium
487
adipose tissue
389
heart
352
kidney
274
brain
233
vasculature
227
blood vessel
139
artery
119
limb
94
musculature of body
75
bone element
69
blood
69
bodily fluid
60
eye
42
nerve
25
spleen
22
vein
20
lung
18
ureter
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
583
AMP
1
T1D
Genome assembly (visualization)
516
hg19
512
GRCh38
Lab
583
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
15
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
RNA microarray
biosample_type!
in vitro differentiated cells
month_released!
February, 2020
organ_slims!
skeleton
BIOSAMPLE
ASSAY
584 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Hi-C
RRBS
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
6
12
1
1
omental fat pad
4
11
1
2
1
+ See 4 more…
primary cell
cardiac fibroblast
5
3
1
osteoblast
5
2
1
1
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
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