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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
69
DNase-seq
64
single cell RNA-seq
54
total RNA-seq
37
ChIP-seq
6
snATAC-seq
3
snDrop-seq
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
1
small RNA-seq
Assay category
151
DNA accessibility
119
Transcription
37
DNA binding
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
129
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
19
October, 2019
14
May, 2023
8
February, 2021
4
July, 2019
2
March, 2020
1
December, 2019
Available data
161
bed narrowPeak
113
bam
103
bigWig
88
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
16
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
hic
Organism
315
Homo sapiens
Biosample type
296
tissue
primary cell
19
cell line
Organ
775
liver
644
connective tissue
596
pancreas
488
adipose tissue
377
heart
315
kidney
brain
198
blood vessel
198
vasculature
139
artery
122
limb
116
epithelium
80
musculature of body
74
bone element
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
268
AMP
47
KPMP
Genome assembly (visualization)
177
GRCh38
103
hg19
Lab
141
Katalin Susztak, Upenn
125
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
5
audit script error
assay_title!
RNA microarray
biosample_type!
primary cell
files.file_type!
hic
organ_slims!
brain
BIOSAMPLE
ASSAY
315 results
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Clear Filters
ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
STARR-seq
pCHi-C
FAIRE-seq
RRBS
small RNA-seq
tissue
kidney
75
13
64
49
27
6
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 8 more…
cell line
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
HEK293T
2
glomerular visceral epithelial cell
1
1
+ See 1 more…
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