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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
DNase-seq
64
single cell RNA-seq
54
total RNA-seq
37
ChIP-seq
11
ATAC-seq
6
snATAC-seq
3
snDrop-seq
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
119
Transcription
87
DNA accessibility
37
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
68
June, 2019
66
August, 2021
47
September, 2023
23
April, 2019
19
October, 2019
14
May, 2023
8
February, 2021
4
July, 2019
2
March, 2020
1
December, 2019
Available data
161
bed narrowPeak
113
bam
103
bigWig
88
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
xls
62
txt
16
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
252
Homo sapiens
Biosample type
233
tissue
primary cell
19
cell line
Organ
777
liver
644
connective tissue
600
pancreas
488
adipose tissue
380
heart
brain
252
kidney
199
blood vessel
199
vasculature
139
artery
122
limb
117
epithelium
82
musculature of body
74
bone element
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
205
AMP
47
KPMP
Genome assembly (visualization)
113
GRCh38
104
hg19
Lab
125
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
5
audit script error
assay_title!
RNA microarray
biosample_type!
primary cell
files.file_type!
xls
organ_slims!
brain
BIOSAMPLE
ASSAY
252 results
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DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
snDrop-seq
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
13
64
49
27
11
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 8 more…
cell line
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
HEK293T
2
glomerular visceral epithelial cell
1
1
+ See 1 more…
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