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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
420
ChIP-seq
5
total RNA-seq
1
Hi-C
1
WGBS
Assay category
420
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
337
transcription factor
82
recombinant protein
63
RNA binding protein
62
control
30
chromatin remodeller
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
61
November, 2018
28
December, 2018
23
January, 2019
Available data
519
bam
466
bigWig
427
fastq
383
bed narrowPeak
348
bigBed narrowPeak
85
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
txt
1
vcf
Organism
427
Homo sapiens
Biosample type
427
cell line
164
tissue
151
primary cell
141
in vitro differentiated cells
4
stem cell
Organ
367
liver
60
blood
60
bodily fluid
Project
427
AMP
Genome assembly (visualization)
367
hg19
321
GRCh38
Lab
427
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_title!
RNA microarray
organ_slims!
pancreas
BIOSAMPLE
ASSAY
427 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
360
5
1
1
GM12878
60
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