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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ATAC-seq
185
ChIP-seq
174
single cell RNA-seq
130
total RNA-seq
RNA microarray
28
snATAC-seq
25
pCHi-C
12
Hi-C
7
WGBS
5
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
304
Transcription
225
DNA accessibility
185
DNA binding
12
3D chromatin structure
12
DNA methylation
Target of assay
162
histone
162
histone modification
81
broad histone mark
81
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
228
August, 2021
114
August, 2017
95
February, 2023
56
October, 2019
47
September, 2023
42
May, 2022
40
May, 2024
31
March, 2020
25
February, 2020
19
April, 2020
15
May, 2023
July, 2019
13
November, 2017
9
February, 2021
8
January, 2021
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
2
January, 2018
2
May, 2021
1
April, 2019
1
August, 2022
1
December, 2019
1
November, 2019
Available data
bam
1709
bigWig
1027
tsv
977
bed narrowPeak
559
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
73
txt
64
xls
11
bed bedMethyl
11
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
769
Homo sapiens
Biosample type
770
tissue
313
primary cell
103
in vitro differentiated cells
80
cell line
7
stem cell
Organ
198
kidney
178
heart
74
pancreas
72
liver
53
eye
48
connective tissue
47
adipose tissue
46
blood vessel
46
vasculature
39
artery
38
brain
34
musculature of body
20
lung
14
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
4
limb
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
675
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
156
GRCh38
101
hg19
Lab
443
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
7
audit script error
3
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
RNA microarray
files.file_type!
bam
zippedFastqFolder
month_released!
July, 2019
BIOSAMPLE
ASSAY
770 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
pCHi-C
Hi-C
WGBS
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
75
64
49
6
1
islet of Langerhans
30
41
26
7
4
3
4
liver
20
23
1
20
1
1
3
1
left cardiac atrium
40
18
subcutaneous abdominal adipose tissue
36
3
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