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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
single cell RNA-seq
163
ChIP-seq
160
ATAC-seq
125
total RNA-seq
RNA microarray
27
snATAC-seq
23
pCHi-C
10
WGBS
9
Hi-C
7
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
292
Transcription
188
DNA accessibility
163
DNA binding
17
DNA methylation
9
3D chromatin structure
Target of assay
143
histone
143
histone modification
74
narrow histone mark
69
broad histone mark
17
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
222
August, 2021
88
August, 2017
60
February, 2023
56
October, 2019
47
September, 2023
40
May, 2022
40
May, 2024
26
March, 2020
20
February, 2020
19
April, 2020
15
May, 2023
13
November, 2017
9
February, 2021
9
July, 2019
8
January, 2021
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
2
May, 2021
1
April, 2019
1
August, 2022
1
December, 2019
1
January, 2018
1
November, 2019
Available data
bam
1645
bigWig
1053
tsv
833
bed narrowPeak
461
bigBed narrowPeak
375
fastq
223
tagAlign
167
bed bed3+
163
bed broadPeak
139
bigBed broadPeak
72
txt
64
xls
21
bed bedMethyl
21
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
698
Homo sapiens
Biosample type
699
tissue
473
primary cell
103
in vitro differentiated cells
80
cell line
7
stem cell
Organ
199
kidney
181
heart
76
pancreas
73
liver
53
eye
48
connective tissue
47
adipose tissue
46
blood vessel
vasculature
39
artery
39
brain
musculature of body
20
lung
14
epithelium
8
bone element
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
604
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
121
GRCh38
87
hg19
Lab
372
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
6
audit script error
3
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
RNA microarray
files.file_type!
bam
organ_slims!
musculature of body
vasculature
BIOSAMPLE
ASSAY
699 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
64
75
49
6
1
1
islet of Langerhans
41
30
26
7
4
3
1
4
liver
1
23
20
20
1
3
1
1
left cardiac atrium
18
40
subcutaneous abdominal adipose tissue
36
3
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