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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
526
ChIP-seq
257
ATAC-seq
180
single cell RNA-seq
RNA microarray
28
snATAC-seq
27
WGBS
24
pCHi-C
16
small RNA-seq
11
RRBS
6
Hi-C
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1227
Transcription
526
DNA binding
286
DNA accessibility
38
DNA methylation
6
3D chromatin structure
Target of assay
312
histone modification
311
histone
212
narrow histone mark
187
control
99
broad histone mark
29
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
461
February, 2021
262
August, 2017
227
August, 2021
193
May, 2020
190
October, 2019
120
July, 2018
95
February, 2023
75
July, 2019
66
May, 2022
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
32
March, 2020
29
October, 2018
25
February, 2020
25
November, 2017
22
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
15
May, 2023
12
December, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
2
January, 2018
1
August, 2022
1
December, 2019
1
January, 2019
Available data
1907
bam
1772
bigWig
1073
tsv
984
bed narrowPeak
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2112
Homo sapiens
Biosample type
2114
tissue
975
primary cell
370
in vitro differentiated cells
305
cell line
10
stem cell
Organ
536
connective tissue
477
adipose tissue
440
pancreas
311
liver
222
heart
210
kidney
149
brain
74
bone element
70
blood vessel
70
vasculature
53
eye
48
artery
42
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
14
epithelium
12
spleen
5
gonad
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2017
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1304
GRCh38
1253
hg19
Lab
1763
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
7
audit script error
6
inconsistent ontology term
Audit category:
23
missing controlled_by
assay_title!
RNA microarray
files.file_type!
bedpe bed3+
bigBed narrowPeak
organ_slims!
ovary
BIOSAMPLE
ASSAY
2114 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
RRBS
Hi-C
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
67
68
6
7
4
1
1
4
adipose tissue
382
1
2
3
1
liver
167
107
20
1
3
1
1
1
kidney
49
9
75
64
6
1
1
bone tissue
58
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