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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
292
ChIP-seq
216
ATAC-seq
174
single cell RNA-seq
136
total RNA-seq
RNA microarray
28
snATAC-seq
25
pCHi-C
11
RRBS
11
WGBS
6
Hi-C
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
310
Transcription
292
DNA binding
245
DNA accessibility
22
DNA methylation
6
3D chromatin structure
Target of assay
187
control
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
227
August, 2021
106
August, 2017
95
February, 2023
80
October, 2019
47
September, 2023
46
May, 2022
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2020
22
March, 2020
22
May, 2019
20
November, 2019
19
April, 2020
17
February, 2021
15
April, 2019
15
May, 2023
14
July, 2019
12
December, 2017
9
October, 2017
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
3
November, 2018
2
May, 2021
1
August, 2022
1
December, 2019
1
January, 2019
Available data
1906
bam
bigWig
1074
tsv
983
bed narrowPeak
561
bigBed narrowPeak
377
fastq
237
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
905
Homo sapiens
Biosample type
907
tissue
471
primary cell
138
cell line
128
in vitro differentiated cells
7
stem cell
Organ
206
kidney
153
heart
129
pancreas
95
liver
65
connective tissue
64
adipose tissue
63
brain
62
blood vessel
62
vasculature
53
eye
46
artery
31
limb
23
musculature of body
20
lung
16
bone element
16
skeleton
14
epithelium
12
nerve
9
spleen
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
812
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
147
GRCh38
99
hg19
Lab
617
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
7
audit script error
4
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
RNA microarray
files.file_type!
bedpe bed3+
bigWig
organ_slims!
pituitary gland
BIOSAMPLE
ASSAY
907 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
pCHi-C
RRBS
WGBS
Hi-C
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
75
64
49
6
1
1
islet of Langerhans
42
64
32
7
4
1
1
4
liver
63
1
20
1
1
3
coronary artery
2
35
1
subcutaneous abdominal adipose tissue
35
3
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