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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
928
total RNA-seq
687
ChIP-seq
220
ATAC-seq
174
single cell RNA-seq
168
DNase-seq
RNA microarray
23
pCHi-C
18
snATAC-seq
17
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1118
Transcription
687
DNA binding
408
DNA accessibility
25
DNA methylation
16
3D chromatin structure
Target of assay
554
histone
554
histone modification
296
narrow histone mark
258
broad histone mark
120
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
461
February, 2021
242
October, 2019
228
August, 2021
193
May, 2020
163
June, 2019
118
July, 2018
115
May, 2019
109
August, 2017
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
47
September, 2023
42
May, 2022
40
May, 2024
40
November, 2019
39
March, 2020
38
May, 2021
25
February, 2020
19
April, 2020
16
October, 2018
15
May, 2023
6
October, 2017
4
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
December, 2019
Available data
1883
bam
1772
bigWig
1073
tsv
966
bed narrowPeak
561
bigBed narrowPeak
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
67
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2283
Homo sapiens
Biosample type
2284
tissue
440
primary cell
230
cell line
206
in vitro differentiated cells
6
stem cell
Organ
503
connective tissue
444
adipose tissue
313
heart
297
kidney
278
liver
265
pancreas
253
brain
133
blood vessel
133
vasculature
122
limb
80
musculature of body
74
bone element
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
urinary bladder
Project
2214
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1579
GRCh38
1461
hg19
Lab
1986
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
7
audit script error
6
inconsistent ontology term
assay_title!
RNA microarray
files.file_type!
fastq
lab.title!
Kyle Gaulton, UCSD
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
2284 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
190
43
37
4
1
3
1
4
liver
167
78
20
1
1
2
1
1
kidney
49
27
75
64
13
6
1
1
1
heart left ventricle
3
35
2
18
3
1
4
1
1
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