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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
741
total RNA-seq
574
ChIP-seq
168
single cell RNA-seq
159
DNase-seq
155
ATAC-seq
RNA microarray
23
pCHi-C
17
snATAC-seq
15
WGBS
14
small RNA-seq
11
Hi-C
6
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
923
Transcription
574
DNA binding
333
DNA accessibility
21
DNA methylation
11
3D chromatin structure
Target of assay
469
histone
469
histone modification
263
narrow histone mark
206
broad histone mark
93
control
12
transcription factor
10
RNA binding protein
Date released
461
February, 2021
220
August, 2021
213
October, 2019
193
May, 2020
156
June, 2019
89
August, 2017
82
November, 2017
80
April, 2019
64
July, 2019
63
May, 2019
47
September, 2023
42
February, 2023
42
May, 2022
40
May, 2024
28
March, 2020
21
February, 2020
19
April, 2020
15
May, 2023
6
October, 2017
3
May, 2021
2
January, 2018
1
December, 2019
1
November, 2019
Available data
1391
bam
1329
bigWig
785
tsv
761
bed narrowPeak
437
bigBed narrowPeak
222
tagAlign
188
bed broadPeak
173
bed bed3+
165
bigBed broadPeak
fastq
67
txt
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
7
hic
6
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
1887
Homo sapiens
Biosample type
1888
tissue
560
primary cell
250
in vitro differentiated cells
77
cell line
6
stem cell
Organ
503
connective tissue
444
adipose tissue
313
heart
297
kidney
pancreas
278
liver
253
brain
133
blood vessel
vasculature
122
limb
80
musculature of body
74
bone element
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
1821
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1258
GRCh38
1164
hg19
Lab
1599
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
6
audit script error
assay_title!
RNA microarray
files.file_type!
fastq
organ_slims!
pancreas
vasculature
BIOSAMPLE
ASSAY
1888 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
ATAC-seq
pCHi-C
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
3
1
liver
167
78
1
20
1
2
1
1
kidney
49
27
64
13
75
6
1
1
1
heart left ventricle
3
35
18
3
2
1
4
1
1
left cardiac atrium
40
18
1
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