Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
891
ChIP-seq
252
ATAC-seq
178
DNase-seq
171
single cell RNA-seq
RNA microarray
27
WGBS
25
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1218
Transcription
891
DNA binding
452
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
615
histone modification
614
histone
321
narrow histone mark
293
broad histone mark
184
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
284
August, 2017
241
October, 2019
228
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
October, 2017
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
December, 2019
Available data
1892
bam
1758
bigWig
1074
tsv
972
bed narrowPeak
555
bigBed narrowPeak
360
fastq
224
tagAlign
209
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
73
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
tagAlign bed3+
Organism
2640
Homo sapiens
Biosample type
2647
tissue
1088
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
500
pancreas
486
adipose tissue
361
liver
313
heart
297
kidney
248
brain
133
blood vessel
133
vasculature
122
limb
82
musculature of body
74
bone element
73
artery
56
eye
43
nerve
24
spleen
18
ureter
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2569
AMP
47
KPMP
31
T1D
Genome assembly (visualization)
1844
GRCh38
1741
hg19
Lab
2315
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
27
inconsistent control
7
audit script error
7
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
RNA microarray
files.file_type!
tagAlign bed3+
lab.title!
Xin Sun, UCSD
month_released!
October, 2017
BIOSAMPLE
ASSAY
2647 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
71
67
1
6
4
7
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
2
1
3
1
1
1
1
kidney
49
27
75
13
64
6
1
1
1
heart left ventricle
3
35
2
3
18
4
1
1
1
+ See 173 more…
See all biosamples
Download