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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
842
ChIP-seq
839
total RNA-seq
178
DNase-seq
177
ATAC-seq
169
single cell RNA-seq
RNA microarray
27
WGBS
25
pCHi-C
22
snATAC-seq
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1024
Transcription
842
DNA binding
381
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
589
histone modification
588
histone
295
narrow histone mark
293
broad histone mark
161
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
461
February, 2021
284
August, 2017
242
October, 2019
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
100
August, 2021
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
October, 2017
19
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
December, 2019
1
May, 2023
Available data
1699
bam
1588
bigWig
931
tsv
881
bed narrowPeak
555
bigBed narrowPeak
360
fastq
209
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
174
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
16
txt
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2324
Homo sapiens
Biosample type
2332
tissue
941
primary cell
661
cell line
394
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
500
pancreas
486
adipose tissue
313
heart
249
brain
168
liver
155
kidney
133
blood vessel
133
vasculature
122
limb
82
musculature of body
74
bone element
73
artery
56
eye
43
nerve
24
spleen
20
lung
18
ureter
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2235
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1608
GRCh38
1571
hg19
Lab
2123
AMP-T2D consortium
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
27
inconsistent control
7
audit script error
7
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
RNA microarray
lab.title!
Katalin Susztak, Upenn
month_released!
May, 2020
October, 2017
BIOSAMPLE
ASSAY
2332 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
71
292
1
67
6
4
7
3
1
1
4
adipose tissue
2
382
3
3
1
liver
95
24
2
20
1
3
1
1
1
1
kidney
27
13
53
1
1
heart left ventricle
35
3
3
2
18
4
1
1
1
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