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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
5
RRBS
4
Hi-C
2
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
22
DNA binding
5
DNA methylation
4
3D chromatin structure
3
Transcription
2
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
3
control
Date released
26
August, 2017
5
July, 2019
2
February, 2020
2
May, 2022
1
January, 2018
1
March, 2020
Available data
68
bigWig
60
bed narrowPeak
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
hic
1
txt
Organism
37
Homo sapiens
Biosample type
36
tissue
1
primary cell
Organ
233
pancreas
207
kidney
184
epithelium
179
heart
108
liver
89
connective tissue
54
eye
48
adipose tissue
48
vasculature
47
blood vessel
43
brain
39
artery
37
musculature of body
20
lung
9
blood
9
bodily fluid
8
bone element
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
37
AMP
Genome assembly (visualization)
18
hg19
Lab
37
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
RNA microarray
files.file_type!
bam
hic
month_released!
May, 2021
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
RRBS
Hi-C
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
gastrocnemius medialis
4
1
left ventricle myocardium
1
psoas muscle
1
primary cell
skeletal muscle cell
1
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