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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
5
Hi-C
4
ChIP-seq
3
total RNA-seq
2
pCHi-C
1
RRBS
Assay category
35
DNA accessibility
5
3D chromatin structure
4
DNA binding
3
Transcription
1
DNA methylation
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
35
February, 2023
August, 2021
5
October, 2019
4
March, 2020
3
February, 2020
3
July, 2019
Available data
bam
155
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
63
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
50
Homo sapiens
Biosample type
45
tissue
5
primary cell
Organ
253
pancreas
204
epithelium
90
heart
86
connective tissue
79
liver
78
kidney
54
eye
48
adipose tissue
45
vasculature
44
blood vessel
43
brain
39
musculature of body
37
artery
20
lung
9
blood
9
bodily fluid
9
bone element
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
50
AMP
Genome assembly (visualization)
35
GRCh38
6
hg19
Lab
50
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
RNA microarray
files.file_type!
bam
month_released!
August, 2021
BIOSAMPLE
ASSAY
50 results
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ATAC-seq
Hi-C
ChIP-seq
total RNA-seq
pCHi-C
RRBS
tissue
coronary artery
35
1
islet of Langerhans
4
aorta
1
1
ascending aorta
1
ovary
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
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