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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
41
WGBS
40
ChIP-seq
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
Assay category
99
DNA accessibility
60
Transcription
41
DNA methylation
40
DNA binding
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
631
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
316
August, 2021
311
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
April, 2019
76
October, 2018
73
September, 2018
59
November, 2019
59
September, 2020
52
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
3
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
134
zippedFastqFolder
78
bed narrowPeak
60
bigWig
24
bam
24
fastq
7
txt
1
bed bed3+
Organism
240
Homo sapiens
Biosample type
134
primary cell
106
tissue
Organ
104
pancreas
80
epithelium
40
heart
40
liver
2
musculature of body
Project
134
HPAP
106
AMP
Genome assembly (visualization)
40
GRCh38
39
hg19
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
24
Kyle Gaulton, UCSD
2
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
RNA microarray
files.file_type!
bedpe bed3+
month_released!
April, 2019
BIOSAMPLE
ASSAY
240 results
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Clear Filters
ATAC-seq
WGBS
ChIP-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
left cardiac atrium
40
liver
20
20
islet of Langerhans
18
6
skeletal muscle tissue
1
1
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